The GENI plots R package is designed to create a series of plots for visualising results from genome-wide association studies (GWAS) and phenome-wide association studies (PheWAS).
Installation
install.packages("remotes")
remotes::install_github("jrs95/geni.plots", build_vignettes = TRUE)Functions
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fig_manhattan: creates a Manhattan plot for genomic markers from across the genome, e.g. results from genome-wide association studies.
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fig_phewas: creates a plot visualising results from phenome-wide association studies (PheWAS).
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fig_qq: creates a quantile-quantile (QQ) plot.
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fig_region: creates a regional plot, i.e. a scatter graph of genomic marker associations (e.g. log10(p-values)) with a gene bar underneath.
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fig_stack_region: creates a stacked regional association plot.
Examples
See vignette for examples: https://jrs95.github.io/geni.plots/articles/geni_plots.html
Citation
Please cite this R package using the link: https://github.com/jrs95/geni.plots